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1:110233147 C / T


Warning! This variant is only covered in 41647 individuals (adjusted allele number = 83294).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs1056806
Allele Frequency
0.1996
Filtering AF
0.3285 (South Asian)
Allele Count
16628 / 83294
UCSC
1-110233147-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 11 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 6314 43788 2016 0.1442
East Asian 1483 5268 573 0.2815
Other 113 614 46 0.184
African 2087 9368 535 0.2228
Latino 2471 8650 841 0.2857
South Asian 3740 11080 1343 0.3375
European (Finnish) 420 4526 120 0.0928
Total 16628 83294 5474 0.1996

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.