Interested in working on the development of this resource? Apply here.

1:113456546 A / T


Filter Status
PASS
dbSNP
rs1049434
Allele Frequency
0.5972
Filtering AF
0.8455 (African)
Allele Count
72494 / 121388
UCSC
1-113456546-A-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 7 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 38487 66732 11170 0.5767
East Asian 5736 8648 1893 0.6633
Other 540 908 158 0.5947
African 8953 10406 3854 0.8604
Latino 6003 11576 1574 0.5186
South Asian 8981 16506 2505 0.5441
European (Finnish) 3794 6612 1091 0.5738
Total 72494 121388 22245 0.5972

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.