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1:116275561 G / C


Filter Status
PASS
dbSNP
rs146664754
Allele Frequency
0.0006922
Filtering AF
0.001075 (Latino)
Allele Count
84 / 121358
UCSC
1-116275561-G-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 61 66712 0 0.0009144
East Asian 0 8644 0 0
Other 0 908 0 0
African 1 10404 0 9.612e-05
Latino 19 11570 0 0.001642
South Asian 3 16510 0 0.0001817
European (Finnish) 0 6610 0 0
Total 84 121358 0 0.0006922

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.