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1:117690272 G / A


Filter Status
PASS
dbSNP
rs10754339
Allele Frequency
0.8725
Filtering AF
0.9206 (Latino)
Allele Count
105749 / 121202
UCSC
1-117690272-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 61741 66658 28618 0.9262
East Asian 7723 8640 3455 0.8939
Other 810 908 363 0.8921
African 3937 10390 754 0.3789
Latino 10749 11492 5037 0.9353
South Asian 14458 16502 6358 0.8761
European (Finnish) 6331 6612 3030 0.9575
Total 105749 121202 47615 0.8725

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.