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1:11876662 G / A


Filter Status
PASS
dbSNP
rs17376328
Allele Frequency
0.05224
Filtering AF
0.05978 (European (Non-Finnish))
Allele Count
5156 / 98700
UCSC
1-11876662-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 8 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3414 55514 80 0.0615
East Asian 2 7332 0 0.0002728
Other 39 718 2 0.05432
African 225 8300 3 0.02711
Latino 179 8544 4 0.02095
South Asian 666 13596 20 0.04898
European (Finnish) 631 4696 43 0.1344
Total 5156 98700 152 0.05224

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.