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1:11907603 G / A


Filter Status
PASS
dbSNP
rs5064
Allele Frequency
0.08941
Filtering AF
0.2772 (African)
Allele Count
10855 / 121412
UCSC
1-11907603-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 5023 66740 188 0.07526
East Asian 74 8654 1 0.008551
Other 92 908 8 0.1013
African 2974 10406 440 0.2858
Latino 601 11578 18 0.05191
South Asian 1805 16512 111 0.1093
European (Finnish) 286 6614 2 0.04324
Total 10855 121412 768 0.08941

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.