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1:149902342 C / T

Note: This variant is multiallelic! The other alt alleles are:

Filter Status
PASS
dbSNP
rs145659444
Allele Frequency
0.004341
Filtering AF
0.005724 (European (Non-Finnish))
Allele Count
527 / 121410
UCSC
1-149902342-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 14 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 415 66738 0 0.006218
East Asian 0 8654 0 0
Other 5 908 0 0.005507
African 10 10406 0 0.000961
Latino 14 11578 0 0.001209
South Asian 31 16512 0 0.001877
European (Finnish) 52 6614 0 0.007862
Total 527 121410 0 0.004341

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.