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1:153588340 C / T


Filter Status
PASS
dbSNP
rs11548103
Allele Frequency
0.4095
Filtering AF
0.4713 (European (Non-Finnish))
Allele Count
49341 / 120494
UCSC
1-153588340-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 15 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 31438 66092 7532 0.4757
East Asian 2792 8614 449 0.3241
Other 367 896 80 0.4096
African 2807 10344 377 0.2714
Latino 2659 11518 349 0.2309
South Asian 6016 16484 1147 0.365
European (Finnish) 3262 6546 802 0.4983
Total 49341 120494 10736 0.4095

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.