Interested in working on the development of this resource? Apply here.

1:154426970 A / C

Note: This variant is multiallelic! The other alt alleles are:

Filter Status
PASS
dbSNP
rs2228145
Allele Frequency
0.3756
Filtering AF
0.556 (Latino)
Allele Count
44253 / 117814
UCSC
1-154426970-A-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 26040 64928 5106 0.4011
East Asian 3284 8340 638 0.3938
Other 339 878 66 0.3861
African 1355 10132 86 0.1337
Latino 6341 11170 1783 0.5677
South Asian 4969 16006 766 0.3104
European (Finnish) 1925 6360 265 0.3027
Total 44253 117814 8710 0.3756

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.