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1:159684186 T / A


Filter Status
PASS
dbSNP
rs1417938
Allele Frequency
0.2781
Filtering AF
0.369 (Latino)
Allele Count
32664 / 117460
UCSC
1-159684186-T-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 8 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 20431 64982 3091 0.3144
East Asian 522 8380 28 0.06229
Other 240 870 34 0.2759
African 1194 9876 81 0.1209
Latino 4159 10984 762 0.3786
South Asian 3810 15936 460 0.2391
European (Finnish) 2308 6432 402 0.3588
Total 32664 117460 4858 0.2781

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.