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1:161293426 C / T


Filter Status
VQSRTrancheSNP99.60to99.80
dbSNP
rs201286421
Allele Frequency
8.25e-06
Filtering AF
0 (None)
Allele Count
1 / 121218
UCSC
1-161293426-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 66654 0 0
East Asian 0 8648 0 0
Other 0 904 0 0
African 0 10388 0 0
Latino 0 11564 0 0
South Asian 1 16446 0 6.081e-05
European (Finnish) 0 6614 0 0
Total 1 121218 0 8.25e-06

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.