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1:16458722 C / T


Filter Status
PASS
dbSNP
rs116506614
Allele Frequency
0.0005935
Filtering AF
0.000867 (Latino)
Allele Count
72 / 121306
UCSC
1-16458722-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 50 66644 0 0.0007503
East Asian 0 8650 0 0
Other 0 906 0 0
African 6 10406 0 0.0005766
Latino 16 11574 0 0.001382
South Asian 0 16512 0 0
European (Finnish) 0 6614 0 0
Total 72 121306 0 0.0005935

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.