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1:196642233 G / A


Filter Status
PASS
dbSNP
rs800292
Allele Frequency
0.321
Filtering AF
0.7031 (African)
Allele Count
38814 / 120934
UCSC
1-196642233-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 15878 66416 1884 0.2391
East Asian 3611 8618 769 0.419
Other 284 904 46 0.3142
African 7430 10366 2670 0.7168
Latino 4362 11550 809 0.3777
South Asian 5245 16466 908 0.3185
European (Finnish) 2004 6614 300 0.303
Total 38814 120934 7386 0.321

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.