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1:196682947 G / A


Filter Status
PASS
dbSNP
rs2274700
Allele Frequency
0.4431
Filtering AF
0.5386 (South Asian)
Allele Count
53468 / 120670
UCSC
1-196682947-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 27778 66416 5836 0.4182
East Asian 3720 8534 826 0.4359
Other 413 904 101 0.4569
African 4776 10396 1095 0.4594
Latino 5125 11344 1136 0.4518
South Asian 9042 16498 2500 0.5481
European (Finnish) 2614 6578 516 0.3974
Total 53468 120670 12010 0.4431

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.