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1:196709774 G / T


Filter Status
PASS
dbSNP
rs1065489
Allele Frequency
0.1955
Filtering AF
0.4868 (East Asian)
Allele Count
23729 / 121388
UCSC
1-196709774-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 10945 66730 943 0.164
East Asian 4314 8642 1099 0.4992
Other 160 908 15 0.1762
African 653 10406 21 0.06275
Latino 4314 11576 823 0.3727
South Asian 2420 16512 199 0.1466
European (Finnish) 923 6614 59 0.1396
Total 23729 121388 3159 0.1955

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.