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1:20945055 C / T


Filter Status
PASS
dbSNP
rs1048977
Allele Frequency
0.3088
Filtering AF
0.3783 (African)
Allele Count
37399 / 121114
UCSC
1-20945055-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 21072 66554 3392 0.3166
East Asian 2066 8632 235 0.2393
Other 251 904 28 0.2777
African 4032 10384 779 0.3883
Latino 3436 11556 506 0.2973
South Asian 4390 16504 636 0.266
European (Finnish) 2152 6580 350 0.3271
Total 37399 121114 5926 0.3088

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.