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1:25628088 G / A


Filter Status
PASS
dbSNP
rs1053360
Allele Frequency
0.0002216
Filtering AF
0.000713 (East Asian)
Allele Count
24 / 108324
UCSC
1-25628088-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3 56590 0 5.301e-05
East Asian 11 8642 0 0.001273
Other 0 834 0 0
African 4 9960 0 0.0004016
Latino 1 11128 0 8.986e-05
South Asian 5 15350 1 0.0003257
European (Finnish) 0 5820 0 0
Total 24 108324 1 0.0002216

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.