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1:35260769 C / T


Filter Status
PASS
dbSNP
rs1764391
Allele Frequency
0.3134
Filtering AF
0.527 (African)
Allele Count
37443 / 119474
UCSC
1-35260769-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 20974 65720 3342 0.3191
East Asian 1472 8576 128 0.1716
Other 278 896 43 0.3103
African 5513 10230 1497 0.5389
Latino 2735 11512 320 0.2376
South Asian 3623 15938 443 0.2273
European (Finnish) 2848 6602 602 0.4314
Total 37443 119474 6375 0.3134

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.