Interested in working on the development of this resource? Apply here.

1:40558081 T / G


Filter Status
PASS
dbSNP
rs137852696
Allele Frequency
1.648e-05
Filtering AF
0 (None)
Allele Count
2 / 121368
UCSC
1-40558081-T-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1 66722 0 1.499e-05
East Asian 0 8652 0 0
Other 0 908 0 0
African 1 10396 0 9.619e-05
Latino 0 11570 0 0
South Asian 0 16506 0 0
European (Finnish) 0 6614 0 0
Total 2 121368 0 1.648e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.