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1:52861899 T / G


Filter Status
PASS
dbSNP
rs3087482
Allele Frequency
0.004135
Filtering AF
0.04078 (African)
Allele Count
502 / 121412
UCSC
1-52861899-T-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 10 66740 0 0.0001498
East Asian 0 8654 0 0
Other 2 908 0 0.002203
African 459 10406 13 0.04411
Latino 30 11578 0 0.002591
South Asian 1 16512 0 6.056e-05
European (Finnish) 0 6614 0 0
Total 502 121412 13 0.004135

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.