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1:78408441 A / G


Filter Status
PASS
dbSNP
rs137853197
Allele Frequency
0.0001001
Filtering AF
9.3e-05 (European (Non-Finnish))
Allele Count
12 / 119876
UCSC
1-78408441-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 11 66220 0 0.0001661
East Asian 0 8564 0 0
Other 0 896 0 0
African 0 9670 0 0
Latino 0 11498 0 0
South Asian 1 16420 0 6.09e-05
European (Finnish) 0 6608 0 0
Total 12 119876 0 0.0001001

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.