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1:97770920 C / T


Filter Status
PASS
dbSNP
rs1801160
Allele Frequency
0.04647
Filtering AF
0.09226 (South Asian)
Allele Count
5630 / 121146
UCSC
1-97770920-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 2 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3122 66686 91 0.04682
East Asian 160 8584 0 0.01864
Other 67 906 2 0.07395
African 266 10404 3 0.02557
Latino 276 11452 6 0.0241
South Asian 1588 16508 92 0.0962
European (Finnish) 151 6606 2 0.02286
Total 5630 121146 196 0.04647

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.