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10:115804036 A / G


Warning! This variant is only covered in 21701 individuals (adjusted allele number = 43402).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs1801252
Allele Frequency
0.304
Filtering AF
0.4694 (Latino)
Allele Count
13194 / 43402
UCSC
10-115804036-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 1 transcripts in 1 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 6056 21684 373 0.2793
East Asian 868 2928 50 0.2964
Other 78 302 4 0.2583
African 1312 3620 129 0.3624
Latino 2372 4884 332 0.4857
South Asian 1798 8080 134 0.2225
European (Finnish) 710 1904 53 0.3729
Total 13194 43402 1075 0.304

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.