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10:124221270 C / T


Warning! This variant is only covered in 1522 individuals (adjusted allele number = 3044).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs1049331
Allele Frequency
0.4159
Filtering AF
0.3941 (South Asian)
Allele Count
1266 / 3044
UCSC
10-124221270-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 195 466 31 0.4185
East Asian 27 58 6 0.4655
Other 14 24 3 0.5833
African 15 48 1 0.3125
Latino 8 24 0 0.3333
South Asian 1007 2424 205 0.4154
European (Finnish) 0 0 0 NA
Total 1266 3044 246 0.4159

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.