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10:131265545 C / T


Warning! This variant is only covered in 8035 individuals (adjusted allele number = 16070).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs16906252
Allele Frequency
0.06857
Filtering AF
0.09596 (European (Non-Finnish))
Allele Count
1102 / 16070
UCSC
10-131265545-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 593 5768 26 0.1028
East Asian 0 480 0 0
Other 12 160 0 0.075
African 21 1276 1 0.01646
Latino 16 378 0 0.04233
South Asian 372 7578 16 0.04909
European (Finnish) 88 430 3 0.2047
Total 1102 16070 46 0.06857

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.