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10:24564653 C / T


Warning! This variant is only covered in 45439 individuals (adjusted allele number = 90878).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs11014002
Allele Frequency
0.09272
Filtering AF
0.28 (East Asian)
Allele Count
8426 / 90878
UCSC
10-24564653-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 8 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3525 48160 96 0.07319
East Asian 1827 6276 208 0.2911
Other 58 730 4 0.07945
African 122 8118 0 0.01503
Latino 510 8120 18 0.06281
South Asian 2071 13934 130 0.1486
European (Finnish) 313 5540 9 0.0565
Total 8426 90878 465 0.09272

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.