Interested in working on the development of this resource? Apply here.

10:54531226 C / T


Filter Status
PASS
dbSNP
rs1800451
Allele Frequency
0.03659
Filtering AF
0.2221 (African)
Allele Count
4439 / 121312
UCSC
10-54531226-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 1 transcripts in 1 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1226 66654 14 0.01839
East Asian 1 8654 0 0.0001156
Other 27 906 0 0.0298
African 2390 10402 248 0.2298
Latino 215 11576 3 0.01857
South Asian 523 16506 13 0.03169
European (Finnish) 57 6614 0 0.008618
Total 4439 121312 278 0.03659

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.