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10:75673101 T / C

Note: This variant is found in phase with 10-75673102-G-A in 1 individuals. Note: This variant is found in phase with 10-75673102-G-T in 2 individuals.

Filter Status
PASS
dbSNP
rs2227564
Allele Frequency
0.7546
Filtering AF
0.9444 (African)
Allele Count
91598 / 121386
UCSC
10-75673101-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 8 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 51254 66736 19788 0.768
East Asian 5574 8642 1830 0.645
Other 689 908 249 0.7588
African 9989 10404 4799 0.9601
Latino 8172 11574 2895 0.7061
South Asian 11539 16512 4075 0.6988
European (Finnish) 4381 6610 1477 0.6628
Total 91598 121386 35113 0.7546

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.