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10:96535173 T / C


Filter Status
PASS
dbSNP
rs41291556
Allele Frequency
0.00154
Filtering AF
0.002052 (European (Non-Finnish))
Allele Count
187 / 121410
UCSC
10-96535173-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 2 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 157 66740 0 0.002352
East Asian 0 8654 0 0
Other 0 908 0 0
African 8 10406 0 0.0007688
Latino 5 11576 0 0.0004319
South Asian 11 16512 0 0.0006662
European (Finnish) 6 6614 0 0.0009072
Total 187 121410 0 0.00154

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.