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10:96602623 G / A


Filter Status
PASS
dbSNP
rs3758581
Allele Frequency
0.06242
Filtering AF
0.1092 (South Asian)
Allele Count
7577 / 121394
UCSC
10-96602623-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 4428 66732 161 0.06635
East Asian 343 8648 6 0.03966
Other 59 908 3 0.06498
African 127 10406 2 0.0122
Latino 403 11578 9 0.03481
South Asian 1874 16508 129 0.1135
European (Finnish) 343 6614 14 0.05186
Total 7577 121394 324 0.06242

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.