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11:108138003 T / C


Filter Status
PASS
dbSNP
rs1800056
Allele Frequency
0.009149
Filtering AF
0.01394 (European (Non-Finnish))
Allele Count
1110 / 121322
UCSC
11-108138003-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 981 66700 13 0.01471
East Asian 0 8644 0 0
Other 5 908 0 0.005507
African 28 10402 0 0.002692
Latino 47 11566 0 0.004064
South Asian 19 16488 0 0.001152
European (Finnish) 30 6614 0 0.004536
Total 1110 121322 13 0.009149

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.