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11:108160350 C / T


Filter Status
PASS
dbSNP
rs1800058
Allele Frequency
0.01271
Filtering AF
0.01796 (European (Non-Finnish))
Allele Count
1457 / 114658
UCSC
11-108160350-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 7 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1185 62842 4 0.01886
East Asian 0 8444 0 0
Other 9 858 0 0.01049
African 31 9122 0 0.003398
Latino 35 11160 0 0.003136
South Asian 114 15796 1 0.007217
European (Finnish) 83 6436 0 0.0129
Total 1457 114658 5 0.01271

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.