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11:116693464 C / T


Filter Status
PASS
dbSNP
rs5092
Allele Frequency
0.7738
Filtering AF
0.8364 (African)
Allele Count
93925 / 121380
UCSC
11-116693464-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 1 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 55265 66736 22933 0.8281
East Asian 5385 8640 1678 0.6233
Other 666 908 247 0.7335
African 8858 10406 3768 0.8512
Latino 8624 11568 3208 0.7455
South Asian 10282 16510 3235 0.6228
European (Finnish) 4845 6612 1769 0.7328
Total 93925 121380 36838 0.7738

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.