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11:17408630 C / T


Filter Status
PASS
dbSNP
rs5215
Allele Frequency
0.6448
Filtering AF
0.8993 (African)
Allele Count
78250 / 121348
UCSC
11-17408630-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 41767 66722 13093 0.626
East Asian 5515 8622 1764 0.6396
Other 578 908 182 0.6366
African 9516 10404 4355 0.9146
Latino 7054 11570 2126 0.6097
South Asian 10353 16510 3307 0.6271
European (Finnish) 3467 6612 901 0.5243
Total 78250 121348 25728 0.6448

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.