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11:17409572 T / C


Filter Status
PASS
dbSNP
rs5219
Allele Frequency
0.6471
Filtering AF
0.9211 (African)
Allele Count
78371 / 121112
UCSC
11-17409572-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 11 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 41667 66546 13054 0.6261
East Asian 5505 8600 1760 0.6401
Other 578 908 182 0.6366
African 9719 10376 4555 0.9367
Latino 7067 11566 2132 0.611
South Asian 10360 16510 3310 0.6275
European (Finnish) 3475 6606 904 0.526
Total 78371 121112 25897 0.6471

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.