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11:48145375 A / C


Filter Status
PASS
dbSNP
rs1566734
Allele Frequency
0.1694
Filtering AF
0.2584 (South Asian)
Allele Count
20511 / 121116
UCSC
11-48145375-A-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 10717 66578 911 0.161
East Asian 2292 8632 307 0.2655
Other 158 908 15 0.174
African 1253 10340 78 0.1212
Latino 1068 11550 62 0.09247
South Asian 4371 16494 599 0.265
European (Finnish) 652 6614 21 0.09858
Total 20511 121116 1993 0.1694

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.