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11:5248205 C / T


Filter Status
PASS
dbSNP
rs63750783
Allele Frequency
0.0001154
Filtering AF
0.000465 (South Asian)
Allele Count
14 / 121364
UCSC
11-5248205-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 2 genes:

non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 66740 0 0
East Asian 0 8622 0 0
Other 1 908 0 0.001101
African 0 10406 0 0
Latino 0 11562 0 0
South Asian 13 16512 0 0.0007873
European (Finnish) 0 6614 0 0
Total 14 121364 0 0.0001154

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.