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11:616865 G / A


Warning! This variant is only covered in 1724 individuals (adjusted allele number = 3448).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs3758650
Allele Frequency
0.07744
Filtering AF
0.06643 (European (Non-Finnish))
Allele Count
267 / 3448
UCSC
11-616865-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 31 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 93 1170 5 0.07949
East Asian 4 66 0 0.06061
Other 6 64 0 0.09375
African 2 374 0 0.005348
Latino 4 94 0 0.04255
South Asian 6 114 0 0.05263
European (Finnish) 152 1566 7 0.09706
Total 267 3448 12 0.07744

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.