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11:88911696 C / A


Filter Status
PASS
dbSNP
rs1042602
Allele Frequency
0.2518
Filtering AF
0.3624 (European (Non-Finnish))
Allele Count
30570 / 121396
UCSC
11-88911696-C-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 24441 66730 4644 0.3663
East Asian 7 8654 0 0.0008089
Other 264 908 32 0.2907
African 645 10406 30 0.06198
Latino 2220 11574 271 0.1918
South Asian 1791 16512 138 0.1085
European (Finnish) 1202 6612 101 0.1818
Total 30570 121396 5216 0.2518

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.