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11:89017961 G / A


Filter Status
PASS
dbSNP
rs1126809
Allele Frequency
0.177
Filtering AF
0.2615 (European (Non-Finnish))
Allele Count
21333 / 120544
UCSC
11-89017961-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 17595 66458 2301 0.2648
East Asian 1 8628 0 0.0001159
Other 150 904 8 0.1659
African 471 10180 20 0.04627
Latino 1039 11342 55 0.09161
South Asian 1002 16490 50 0.06076
European (Finnish) 1075 6542 87 0.1643
Total 21333 120544 2521 0.177

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.