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12:103234271 G / A


Filter Status
PASS
dbSNP
rs5030858
Allele Frequency
0.0006594
Filtering AF
0.000905 (European (Non-Finnish))
Allele Count
80 / 121328
UCSC
12-103234271-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 74 66718 0 0.001109
East Asian 0 8654 0 0
Other 0 908 0 0
African 3 10406 0 0.0002883
Latino 0 11518 0 0
South Asian 0 16510 0 0
European (Finnish) 3 6614 0 0.0004536
Total 80 121328 0 0.0006594

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.