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12:103246700 C / T

Note: This variant is found in phase with 12-103246702-C-G in 1 individuals.

Filter Status
PASS
dbSNP
rs1042503
Allele Frequency
0.2906
Filtering AF
0.7387 (East Asian)
Allele Count
35234 / 121256
UCSC
12-103246700-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 1 genes:

non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 17231 66676 2216 0.2584
East Asian 6506 8628 2437 0.7541
Other 273 908 46 0.3007
African 475 10398 7 0.04568
Latino 2596 11542 309 0.2249
South Asian 6099 16510 1189 0.3694
European (Finnish) 2054 6594 320 0.3115
Total 35234 121256 6524 0.2906

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.