Interested in working on the development of this resource? Apply here.

12:121177159 C / T


Filter Status
PASS
dbSNP
rs28940872
Allele Frequency
0.0001384
Filtering AF
8.6e-05 (European (Non-Finnish))
Allele Count
16 / 115586
UCSC
12-121177159-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 10 63052 0 0.0001586
East Asian 0 8470 0 0
Other 0 850 0 0
African 2 9252 0 0.0002162
Latino 1 11310 0 8.842e-05
South Asian 3 16338 0 0.0001836
European (Finnish) 0 6314 0 0
Total 16 115586 0 0.0001384

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.