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12:58157521 C / T


Filter Status
PASS
dbSNP
rs568165874
Allele Frequency
0.0001238
Filtering AF
9.2e-05 (European (Non-Finnish))
Allele Count
15 / 121154
UCSC
12-58157521-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 12 transcripts in 3 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 11 66554 0 0.0001653
East Asian 1 8654 0 0.0001156
Other 0 908 0 0
African 0 10344 0 0
Latino 1 11570 0 8.643e-05
South Asian 2 16510 0 0.0001211
European (Finnish) 0 6614 0 0
Total 15 121154 0 0.0001238

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.