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12:6153534 T / C


Filter Status
PASS
dbSNP
rs1063856
Allele Frequency
0.3232
Filtering AF
0.5683 (African)
Allele Count
39152 / 121134
UCSC
12-6153534-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 23735 66648 4178 0.3561
East Asian 638 8624 27 0.07398
Other 297 902 40 0.3293
African 6036 10398 1745 0.5805
Latino 1910 11550 191 0.1654
South Asian 4161 16502 576 0.2522
European (Finnish) 2375 6510 411 0.3648
Total 39152 121134 7168 0.3232

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.