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12:6442346 A / G


Filter Status
PASS
dbSNP
rs1800692
Allele Frequency
0.6665
Filtering AF
0.9012 (African)
Allele Count
76028 / 114078
UCSC
12-6442346-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 20 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 38649 62148 11490 0.6219
East Asian 3978 7704 926 0.5164
Other 592 864 198 0.6852
African 9273 10114 4247 0.9168
Latino 8198 10924 2977 0.7505
South Asian 11246 16098 3918 0.6986
European (Finnish) 4092 6226 1295 0.6572
Total 76028 114078 25051 0.6665

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.