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12:89744637 T / C


Filter Status
PASS
dbSNP
rs143946794
Allele Frequency
0.0001815
Filtering AF
0.000199 (European (Non-Finnish))
Allele Count
22 / 121220
UCSC
12-89744637-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 20 66592 0 0.0003003
East Asian 0 8644 0 0
Other 1 902 0 0.001109
African 0 10388 0 0
Latino 0 11572 0 0
South Asian 1 16508 0 6.058e-05
European (Finnish) 0 6614 0 0
Total 22 121220 0 0.0001815

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.