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12:9242623 A / T


Filter Status
PASS
dbSNP
rs11609582
Allele Frequency
0.1415
Filtering AF
0.1918 (African)
Allele Count
17048 / 120482
UCSC
12-9242623-A-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 10520 66614 862 0.1579
East Asian 302 8616 7 0.03505
Other 130 898 13 0.1448
African 1950 9790 201 0.1992
Latino 795 11564 26 0.06875
South Asian 2649 16386 241 0.1617
European (Finnish) 702 6614 38 0.1061
Total 17048 120482 1388 0.1415

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.