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13:108863591 G / A


Filter Status
PASS
dbSNP
rs1805388
Allele Frequency
0.173
Filtering AF
0.2262 (Latino)
Allele Count
20164 / 116530
UCSC
13-108863591-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 11206 63656 1036 0.176
East Asian 1887 8554 210 0.2206
Other 131 876 13 0.1495
African 979 9064 52 0.108
Latino 2671 11436 323 0.2336
South Asian 1426 16344 71 0.08725
European (Finnish) 1864 6600 257 0.2824
Total 20164 116530 1962 0.173

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.