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13:47469940 G / A


Filter Status
PASS
dbSNP
rs6313
Allele Frequency
0.4071
Filtering AF
0.5692 (East Asian)
Allele Count
49405 / 121344
UCSC
13-47469940-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 27319 66708 5657 0.4095
East Asian 5032 8636 1504 0.5827
Other 370 908 70 0.4075
African 3864 10404 747 0.3714
Latino 3775 11566 638 0.3264
South Asian 6885 16512 1456 0.417
European (Finnish) 2160 6610 349 0.3268
Total 49405 121344 10421 0.4071

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.